outbreak! (ebola, sars, coronavirus, etc)

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I don't know how people are wearing those gaiters in summer.

Donald Trump Also Sucks, Of Course (milo z), Monday, 10 August 2020 05:39 (three years ago) link

I like their method.

American Fear of Scampos (Ed), Monday, 10 August 2020 06:59 (three years ago) link

It has however been criticized for sloppiness in conflating fabric types, and for blurring some important distinctions between test subjects. Biologist Emily Willingham writes:

PSA: You might see headlines about a study that is purported to have assessed different types of masks and particularly found those neck gaiters to be "worse than nothing." So, that's not what the study found or even truly examined.

This study [linked in the first comment] was published in a journal called "Science Advances." Its real purpose is to illustrate the application of a pretty straightforward way of measuring droplet transmission through masks made of different materials--it's "proof-of-concept" that their setup for doing this works.

It is not, however, proof of anything else. Here's why.

They tested their process on 12 masks. For each mask, one person--the same person throughout--put the mask on and said a sentence. For each mask, this (same) person did this 10 times.

For a subset of three of these masks, the authors added in three more people, so they also have data for transmission averaged across four people (including that one person they started with) for three masks types: surgical, one type of cotton mask, and bandana.

They averaged the 10 test results for that one person and presented the results in a graph. That graph does *not* show that this one person's results for a gaiter were worse than "wearing nothing." The standard deviations overlap, so for this single person wearing this single kind of gaiter and saying the same sentence 10 times, it's about the same as if *this person* were wearing nothing.

One catch among many: They also show how this person and the other three people transmit while wearing nothing. Turns out, the person they chose for testing all 12 masks is a Loud Talker or a Big Spitter or something, because the curve for that person is really, really different (higher) than for the other three people, whose curves cluster together. So, the one person who did all the mask testing for the 12 masks, saying the same sentence 10 times running, per mask, with only a sip of water in between, is also a Big Spittin' Loud Talker. Probably the PI [academic scientist joke]. This guy didn't even *himself* transmit the same on different days.

Another catch: when you look at how the four people transmitted in each of the masks, there's no clear pattern for any of them. Some of them transmit more through one kind of mask than another. Sometimes, one of them transmits more than another through the same mask and other times, it reverses. Regardless, transmission in these comparisons was ****always reduced**** with a mask on.

Yet another: When the values for all of this are log transformed, which removes some of the chaos from the data, the gaiter they used and "nothing" are almost identical. All the cotton stuff is pretty similar in performance. The only mask that really stands out as having a much bigger transmission inhibition effect is the N95. Which we knew. The other masks all do *something*, and none of them is "worse than nothing."

Finally, the authors are extremely opaque about the materials in these masks. They call the gaiter a "fleece," but it's not what regular folks probably consider "fleece." From the picture, which is small, making the fabric difficult to discern, it looks like a single-layer shiny stretch fabric gaiter. The same applies for the other masks: it's not clear what the fabric is. There's one that they call "knitted" that is actually, I think, "knit" rather than something you made with knitting needles and yarn.

At any rate, the masks are all singular examples, each the same mask used for the 10 tests in the one person who was the test subject. There is no information about whether the testing was standardized in some way, such as fit of the mask to the face, etc., or readjustment after each sip of water between the tests. One reason for that is likely that this study was not intended to test *these masks* or *these materials* per se but to demonstrate that this process could work to measure droplet transmission.

A study designed to genuinely compare masks and materials would have included far more participants, a standardized approach to donning the mask, probably longer breaks in between tests and water sips, and more detail (or, really, any detail) about the masks themselves. The authors overreach, I think (and others agree) in drawing *any* conclusions about broad categories of masks based on this work.

All of which is to say, this study likely shouldn't change much about what you're doing unless, of course, you're planning to set up a "low-cost" and "simple optical measurement" process to test masks.

Of course I have no idea who's right but it may not be as simple as "bandanas are useless" or "gaiters are worse than nothing." I know everyone wants simple actionable guidance (and science reporting wants to feed that desire).

vitreous humorist (Ye Mad Puffin), Monday, 10 August 2020 13:33 (three years ago) link

One catch among many: They also show how this person and the other three people transmit while wearing nothing. Turns out, the person they chose for testing all 12 masks is a Loud Talker or a Big Spitter or something, because the curve for that person is really, really different (higher) than for the other three people, whose curves cluster together.


This is a legit criticism. It means “worse than nothing” should probably be “worse than the others but better than nothing”.

Another catch: when you look at how the four people transmitted in each of the masks, there's no clear pattern for any of them.


This isn’t a catch. This is what happens when you conduct experiments. It’s why averages exist.

Yet another: When the values for all of this are log transformed, which removes some of the chaos from the data, the gaiter they used and "nothing" are almost identical.


When you apply an arbitrary function that compresses the range of the data, it looks nicer. Is this a joke? Look, I was an astrophysicist for a while. I have a strong stomach for “take logs to make it look nicer” but come on!

Finally, the authors are extremely opaque about the materials in these masks. They call the gaiter a "fleece," but it's not what regular folks probably consider "fleece." From the picture, which is small, making the fabric difficult to discern, it looks like a single-layer shiny stretch fabric gaiter.


Fair.

The actionable guidance appears to be: cheap surgical masks are really good.

𝔠𝔞𝔢𝔨 (caek), Monday, 10 August 2020 13:42 (three years ago) link

i popped into a shop (a small co-op) on the main road earlier this morning and nobody (except me) had masks on. it might just be that it was the kind of shop people pop into on their way past (as opposed my usual sainsbury local in the back streets which is more of a destination)

koogs, Monday, 10 August 2020 14:14 (three years ago) link

corner shops are like 25% masking up ime

Li'l Brexit (Tracer Hand), Monday, 10 August 2020 14:31 (three years ago) link

CNN headline I saw: Florida reports lowest daily increase in cases since June. It's still going up, just not as fast. Mission Accomplished!

Mom jokes are his way of showing affection (to your mom) (PBKR), Monday, 10 August 2020 19:13 (three years ago) link

Florida reports lowest daily increase in cases since June. It's still going up, just not as fast. that stat juking still needs time to ramp up imo

(•̪●) (carne asada), Monday, 10 August 2020 19:46 (three years ago) link

I'm all for us tripping our way out of this, but this is a pretty wild idea.

DJI, Monday, 10 August 2020 21:49 (three years ago) link

You know, secretly drug the populace into submission - what could go wrong?!

DJI, Monday, 10 August 2020 21:49 (three years ago) link

i am fairly certain there have been multiple Batman plots based on that idea

Fuck the NRA (ulysses), Monday, 10 August 2020 21:51 (three years ago) link

xpost sales of Metal Machine Music will go through the roof

popeye's arse (Neanderthal), Monday, 10 August 2020 21:52 (three years ago) link

Can anyone in the UK recommend a mask for people with big faces? I have a big head. A very big nose too. I can never find a mask that stretches from nose to chin properly. Any recommendations?

(The best mask I have is the one I sewed myself, but I don’t have a sewing machine so it’s a hassle to make them.)

Chuck_Tatum, Monday, 10 August 2020 22:05 (three years ago) link

this is my favorite. https://propercloth.com/products/the-everyday-mask-991.html.

i have backups that i wear if it's being washed or whatever, and i don't particularly like the way this one looks, but it fits me so much better than any of the others (i have a massive head apparently). it's expensive. they ship to the UK although i dread to think of the price. last resort for you probably.

𝔠𝔞𝔢𝔨 (caek), Monday, 10 August 2020 22:15 (three years ago) link

I have a cloth mask that ties behind the head with 2 straps. It's a bit harder to put on and off, but I don't like having elastic bands putting pressure on the backs of my ears. Of course I always wear it when going inside shops or anywhere, but walking around, especially early in the morning or late at night when not many people are out, I usually keep it around my neck, so I can quickly pull it back up over my face if I see someone coming towards me on the sidewalk. Once I was a bit slow in reacting, and someone stepped off the sidewalk to pass me, and I was mask-shamed, by them muttering under their breath. Fair enough, I deserved it. Now I am vigilant. I notice a lot of people seem to follow the same protocol, because I see them quickly reaching to pull up their mask when they see me coming.

o. nate, Tuesday, 11 August 2020 01:27 (three years ago) link

I wear a size 7 3/4 fitted hat (pretty large) and the disposables plus an earsaver are the most comfortable for me.

Donald Trump Also Sucks, Of Course (milo z), Tuesday, 11 August 2020 01:31 (three years ago) link

I "sewed" the earsaver out of a strip of nylon and two buttons.

Like this
https://sewing.patternreview.com/images/thumbnails/pattern/163744/photo1.jpg

Donald Trump Also Sucks, Of Course (milo z), Tuesday, 11 August 2020 01:32 (three years ago) link

Those propercloth ones look nice - elastic bands around the back of the head are nicer (to me) than the ones that go around your ears.

DJI, Tuesday, 11 August 2020 01:32 (three years ago) link

I'd like a nicer, more breathable mask, but it's hard to justify the cost of paying that much for a mask vs. $0.50 in bulk for the disposables, which is arguably safer anyway

Nhex, Tuesday, 11 August 2020 01:55 (three years ago) link

NSW is playing whack-a-mole with cases in schools popping up all over the place, leading to mass isolation on student bodies and faculty. If NSW goes back into lockdown it will probably be cause of school outbreaks.

Also the case profile in Victoria, where our big outbreak is and where I am in lockdown skews very young

The Victorian government has just released data on Covid-19 cases by age group: pic.twitter.com/RZU1jFRZVG

— Melissa Davey (@MelissaLDavey) August 11, 2020

None of this looks great for reopening schools elsewhere

American Fear of Scampos (Ed), Tuesday, 11 August 2020 07:59 (three years ago) link

Russia has just registered the first COVID-19 vaccine, though there is a huge amount of scepticism as to how many shortcuts might have been taken in getting it out.

Scampo di tutti i Scampi (ShariVari), Tuesday, 11 August 2020 08:48 (three years ago) link

In theory, available to the public in January.

Scampo di tutti i Scampi (ShariVari), Tuesday, 11 August 2020 08:49 (three years ago) link

It's been approved before the completion of clinical trials. What happens if those trials conclude that the vaccine is either ineffective or unsafe?

Matt DC, Tuesday, 11 August 2020 09:36 (three years ago) link

This is of marginal interest but it looks like deaths in the home have gone up in Scotland (where there is more data to play with, in itself a question as to what else could be missing from English data).

Yes, that's what I meant, apologies if I wasn't clear.

The displacement of cardiovascular deaths seems to have reduced in a way that hasn't (yet) happened for cancer.

This plot maybe shows it even more clearly: pic.twitter.com/8Nco2yeWiv

— Colin Angus (@VictimOfMaths) August 5, 2020

xyzzzz__, Tuesday, 11 August 2020 09:40 (three years ago) link

First new cases in 102 days in New Zealand tonight, all in the same family in Auckland. Also a care home in Christchurch has gone into isolation due to an outbreak of "respiratory illness"

nate woolls, Tuesday, 11 August 2020 10:26 (three years ago) link

Russia has just registered the first COVID-19 vaccine, though there is a huge amount of scepticism as to how many shortcuts might have been taken in getting it out.

In Soviet Russia, vaccines test YOU.

vitreous humorist (Ye Mad Puffin), Tuesday, 11 August 2020 11:54 (three years ago) link

This is of marginal interest but it looks like deaths in the home have gone up in Scotland

Seems like the overall numbers for cancer deaths align with the 5 year average but the location has moved, meaning (presumably) either more people are being sent home to die from it or are simply not being admitted to hospital.
Perhaps in the current climate people are less likely to phone an ambulance?
With many cancer screening and treatment programmes suspended we may still see a rise in cancer deaths in the coming months/years.

オニモ (onimo), Tuesday, 11 August 2020 12:31 (three years ago) link

Also people are just afraid to go to a hospital or to the doctors. It's a disaster in the making.

Matt DC, Tuesday, 11 August 2020 12:36 (three years ago) link

Will read this later

if you're interested in how national Coronavirus responses integrate with political systems, this is really good: https://t.co/6JjDteVQnO

— jamie k (@jkbloodtreasure) August 11, 2020

xyzzzz__, Tuesday, 11 August 2020 13:31 (three years ago) link

xp, FWIW, in the US, deaths of children are lower this year than last. less travel, less cars on the road, etc. i assume the same thing has happened in the UK.

𝔠𝔞𝔢𝔨 (caek), Tuesday, 11 August 2020 17:27 (three years ago) link

Peter Hessler is fantastic, only a little way through that piece and now I have to start work but I’m looking forward to the rest.

American Fear of Scampos (Ed), Tuesday, 11 August 2020 22:11 (three years ago) link

xpost I *think* I saw somewhere that road accidents are down but deaths are ... up?

Josh in Chicago, Tuesday, 11 August 2020 22:13 (three years ago) link

yes, I saw that too. i think speeding is assumed to be the explanation.

𝔠𝔞𝔢𝔨 (caek), Tuesday, 11 August 2020 22:24 (three years ago) link

The few times I've ventured out on the highways there have been at least one or two cars passing by at 90+mph when the flow of traffic was 65-70mph.

Jersey Al (Albert R. Broccoli), Tuesday, 11 August 2020 22:45 (three years ago) link

The Hessler piece is great.

I always thought it was going to be some combination of the climate emergency and peak oil that was going to doom faith in classic corvettes-n-beer liberal democracies but this pandemic has really shot from the back of the pack.

Li'l Brexit (Tracer Hand), Tuesday, 11 August 2020 22:46 (three years ago) link

pre-covid FDA report on drugs and vaccines that have failed phase 3 trials. seems like it's rare but it happens.

https://www.fda.gov/media/102332/download

𝔠𝔞𝔢𝔨 (caek), Wednesday, 12 August 2020 06:24 (three years ago) link

4 new cases in NZ after 100+ days of 0. they are talking about it coming in on freight, which is worrying.

koogs, Wednesday, 12 August 2020 08:23 (three years ago) link

Occam's Razor indicates it probably came in from a person.

The 1976 flu vaccine and attempted mass inoculation debacle, the one that in a lot of ways really set the anti-vac movement in motion, how far along in the testing process did that vaccine make it before they gave the go ahead?

Josh in Chicago, Wednesday, 12 August 2020 12:05 (three years ago) link

definitely don't want to play a direct role in duterte in dying, not saying that, just saying if he happens to die from covid-19 or a russian vaccine, not everyone in the world would be sad

Filipino President Rodrigo Duterte has offered to be the first to participate in Russia’s trials of a covid-19 vaccine, despite concerns that Moscow’s treatment has not yet received regulatory approval or been rigorously tested.

The GOAT Harold Land (Karl Malone), Wednesday, 12 August 2020 16:11 (three years ago) link

pre-covid FDA report on drugs and vaccines that have failed phase 3 trials. seems like it's rare but it happens.

https://www.fda.gov/media/102332/download

― 𝔠𝔞𝔢𝔨 (caek), Wednesday, August 12, 2020 2:24 AM (fourteen hours ago) bookmarkflaglink

I only read the intro and discussion sections of this but if I’m understanding your conclusion correctly (that if a drug makes it to phase 3 trials, failure is unlikely) I don’t think that’s really the case. I will look for some more data that aim to be comprehensive later. (I bet vinay prasad has studied this question, if you want to beat me to it.)

k3vin k., Wednesday, 12 August 2020 20:40 (three years ago) link

Marion County (FL) Sheriff Billy Woods on Tuesday told his deputies that they are prohibited from wearing masks while on duty just as Florida set a new daily record for COVID-19 fatalities.

According to the Ocala Star-Banner, Woods wrote in an email to the sheriff’s department on Tuesday that “my order will stand as is when you are on-duty/working as my employee and representing my Office – masks will not be worn.”

Woods’ order also applies to visitors to the sheriff’s office, but makes exceptions for officers in locations where there are people who are at high-risk or suspected of having contracted COVID-19, such as hospitals.

so wait. if for some reason i walk into the sheriff's office in Marion County, FL, i will be ordered to NOT wear a mask? i'm sure there are some legal arguments happening right now about whether or not you can force someone to wear a mask. but, can you force someone to not wear something that adds to their protection and offends or affects no one else?

The GOAT Harold Land (Karl Malone), Wednesday, 12 August 2020 20:42 (three years ago) link

hey you there - no sunscreen allowed on this beach, pardner

The GOAT Harold Land (Karl Malone), Wednesday, 12 August 2020 20:42 (three years ago) link

It's a good question, actually. I'm assuming they can force you to temporarily lower it, to verify ID. Or, like, getting your driver's license or passport picture taken, sure. But forbid you from putting it back up after? Yeah, I don't see how that's legal.

Josh in Chicago, Wednesday, 12 August 2020 20:45 (three years ago) link

I only read the intro and discussion sections of this but if I’m understanding your conclusion correctly (that if a drug makes it to phase 3 trials, failure is unlikely) I don’t think that’s really the case. I will look for some more data that aim to be comprehensive later. (I bet vinay prasad has studied this question, if you want to beat me to it.)

― k3vin k., Wednesday, August 12, 2020 4:40 PM (nine minutes ago) bookmarkflaglink

i think the report's implied conclusion is that "we can't get rid of phase 3 (apparently a think people were talking about a couple years back) because > 0 failures have occurred in phase 3". which... fair enough?

i can't tell if it's supposed to be a complete list of all the phase 3 failures in some period, or it's just some examples. i think it's examples though. so "rare" may not strictly be the right word. but reading between the lines, i get the impression that phase 3 failure is not *common* either. if you have numbers i'd be interested.

which is ... good and bad news i guess?

the good news is that the probability of *all* advanced trials failing phase 3 is seems like it's very low. just as an example, suppose these ten or so vaccinations can be considered truly independent (they're not, but there's at least a few very different approaches). and suppose 50% of phase 3 trials fail (which seems high, but whatever). the probability that they *all* fail is the same as the probability of tossing ten heads in a row, which happens about 1/1000th of the time. at least one of these will probably pass phase 3!

the bad news is that, since the phase 3 failure rate is not *zero* we can't skip phase 3. Like you might skip it if the drug was going to be given to a small number of people who were going to die. but we're talking about mass vaccination of hundreds of millions of currently healthy people will get the vaccination.

𝔠𝔞𝔢𝔨 (caek), Wednesday, 12 August 2020 21:10 (three years ago) link

Let's just all take all ten and see what happens.

Donald Trump Also Sucks, Of Course (milo z), Wednesday, 12 August 2020 21:25 (three years ago) link

yeah let's us the time more usefully by posting on the joe biden thread

𝔠𝔞𝔢𝔨 (caek), Wednesday, 12 August 2020 21:29 (three years ago) link

*use

𝔠𝔞𝔢𝔨 (caek), Wednesday, 12 August 2020 21:30 (three years ago) link

I hope you all enjoy your vaccines because Australia is doing fuck all to secure any supplies of potential vaccines.

American Fear of Scampos (Ed), Wednesday, 12 August 2020 21:41 (three years ago) link

apologies if this is paywalled, but what happened in LA is covered well here, and is a applies to a lot of the US

https://www.latimes.com/projects/how-rushed-la-reopening-sparked-covid-19-cases/#nt=1col-7030col1-main

𝔠𝔞𝔢𝔨 (caek), Thursday, 13 August 2020 17:55 (three years ago) link


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